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DATE
2009
IEEE
159views Hardware» more  DATE 2009»
13 years 11 months ago
Design and implementation of a database filter for BLAST acceleration
— BLAST is a very popular Computational Biology algorithm. Since it is computationally expensive it is a natural target for acceleration research, and many reconfigurable archite...
Panagiotis Afratis, Constantinos Galanakis, Euripi...
IPPS
2005
IEEE
13 years 10 months ago
RC-BLAST: Towards a Portable, Cost-Effective Open Source Hardware Implementation
Basic Local Alignment Search Tool (BLAST) is a standard computer application that molecular biologists use to search for sequence similarity in genomic databases. This report desc...
Krishna Muriki, Keith D. Underwood, Ron Sass
BMCBI
2004
150views more  BMCBI 2004»
13 years 4 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
IAJIT
2010
140views more  IAJIT 2010»
13 years 3 months ago
HW/SW Design-Based Implementation of Vector Median Rational Hybrid Filter
: A new code sign implementation of vector median rational hybrid filter based on efficient hardware/software implementation is introduced and applied to colour image filtering pro...
Anis Boudabous, Ahmed Ben Atitallah, Lazhar Khriji...
FCCM
2009
IEEE
169views VLSI» more  FCCM 2009»
13 years 11 months ago
RC-BLASTn: Implementation and Evaluation of the BLASTn Scan Function
BLASTn is a tool universally used by biologists to identify similarities between nucleotide based biological genome sequences. This report describes an FPGA based hardware impleme...
Siddhartha Datta, Parag Beeraka, Ron Sass