65 search results - page 3 / 13 » Design and implementation of a database filter for BLAST acc... |
SIGMOD
2002
ACM
14 years 5 months ago
2002
ACM
Modern CPUs have instructions that allow basic operations to be performed on several data elements in parallel. These instructions are called SIMD instructions, since they apply a...
BMCBI
2011
12 years 9 months ago
2011
Background: The implementation of high throughput sequencing for exploring biodiversity poses high demands on bioinformatics applications for automated data processing. Here we in...
BIBE
2008
IEEE
14 years 7 days ago
2008
IEEE
— This paper describes a design and implementation of the Smith-Waterman algorithm accelerated on the graphics processing unit (GPU). Our method is implemented using compute uniï...
BMCBI
2011
12 years 9 months ago
2011
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
PVLDB
2008
13 years 5 months ago
2008
With the rise of XML, the database community has been challenged by semi-structured data processing. Since the data type behind XML is the tree, state-of-the-art RDBMSs have learn...