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» Development of a parallel molecular dynamics code on SIMD co...
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JCPHY
2011
192views more  JCPHY 2011»
12 years 7 months ago
Fast analysis of molecular dynamics trajectories with graphics processing units - Radial distribution function histogramming
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in ...
Benjamin G. Levine, John E. Stone, Axel Kohlmeyer
IEEEPACT
2006
IEEE
13 years 10 months ago
Program generation for the all-pairs shortest path problem
A recent trend in computing are domain-specific program generators, designed to alleviate the effort of porting and reoptimizing libraries for fast-changing and increasingly com...
Sung-Chul Han, Franz Franchetti, Markus Püsch...
CONCURRENCY
1998
115views more  CONCURRENCY 1998»
13 years 4 months ago
Falcon: On-line monitoring for steering parallel programs
Abstract Advances in high performance computing, communications, and user interfaces enable developers to construct increasingly interactive high performance applications. The Falc...
Weiming Gu, Greg Eisenhauer, Karsten Schwan, Jeffr...
IPPS
2010
IEEE
13 years 2 months ago
Improving numerical reproducibility and stability in large-scale numerical simulations on GPUs
The advent of general purpose graphics processing units (GPGPU's) brings about a whole new platform for running numerically intensive applications at high speeds. Their multi-...
Michela Taufer, Omar Padron, Philip Saponaro, Sand...