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CSB
2005
IEEE
163views Bioinformatics» more  CSB 2005»
13 years 11 months ago
A symbolic approach to the simulation of biochemical models: application to circadian rhythms
Symbolic rewriting systems are gaining interest as tools for simulating biochemical dynamics. Compared to traditional methods based on differential equations, the symbolic approac...
Federico Fontana, Luca Bianco, Vincenzo Manca
IEAAIE
2004
Springer
13 years 11 months ago
Cell Modeling Using Agent-Based Formalisms
The systems biology community is building increasingly complex models and simulations of cells and other biological entities. This community is beginning to look at alternatives t...
Ken Webb, Tony White
BMCBI
2010
259views more  BMCBI 2010»
13 years 23 days ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
BC
2002
90views more  BC 2002»
13 years 5 months ago
Converging evidence for a simplified biophysical model of synaptic plasticity
Different mechanisms that could form the molecular basis for bi-directional synaptic plasticity have been identified experimentally and corresponding biophysical models can be cons...
Harel Z. Shouval, Gastone C. Castellani, Brian S. ...
ICCSA
2010
Springer
13 years 4 months ago
Emergent Stock Market Behaviour from a Multitude of Simple Agents
In our work the focus is on emergent behaviour in large groups of stock market participants. We do not assume that market participants take rational investment decisions based on f...
Volker Nissen, Danilo Saft