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    BMCBI
    2007
    141views more  BMCBI 2007»
    HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
    13 years 5 months ago
    HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
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    Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
    Erik Larsson, Per Lindahl, Petter Mostad
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    BMCBI
    2007
    115views more  BMCBI 2007»
    Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
    13 years 5 months ago
    Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
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    Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
    Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
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    BMCBI
    2007
    116views more  BMCBI 2007»
    Clustering protein environments for function prediction: finding PROSITE motifs in 3D
    13 years 5 months ago
    Clustering protein environments for function prediction: finding PROSITE motifs in 3D
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    Background: Structural genomics initiatives are producing increasing numbers of threedimensional (3D) structures for which there is little functional information. Structure-based ...
    Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, G...
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    RECOMB
    2003
    Springer
    169views Computational Biology» more  RECOMB 2003»
    Modeling dependencies in protein-DNA binding sites
    14 years 5 months ago
    Modeling dependencies in protein-DNA binding sites
    Download  www.cs.huji.ac.il
    The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
    Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kap...
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    BMCBI
    2010
    153views more  BMCBI 2010»
    Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction
    13 years 5 months ago
    Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction
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    Background: Structural variations caused by a wide range of physico-chemical and biological sources directly influence the function of a protein. For enzymatic proteins, the struc...
    Drew H. Bryant, Mark Moll, Brian Y. Chen, Viachesl...
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