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» Distributed Arrays: A P2P Data Structure for Efficient Logic...
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TSI
2008
89views more  TSI 2008»
13 years 4 months ago
RedGRID, un environnement pour la redistribution d'objets complexes
In the context of code coupling, efficient data redistribution is a crucial issue to reach high-performances. However, most of the works in this area have limited their studies to ...
Aurélien Esnard
BMCBI
2008
103views more  BMCBI 2008»
13 years 4 months ago
Parameter estimation for robust HMM analysis of ChIP-chip data
Background: Tiling arrays are an important tool for the study of transcriptional activity, proteinDNA interactions and chromatin structure on a genome-wide scale at high resolutio...
Peter Humburg, David Bulger, Glenn Stone
IPPS
2009
IEEE
13 years 11 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
IPPS
2002
IEEE
13 years 9 months ago
Implementing Associative Search and Responder Resolution
In a paper presented last year at WMPP’01 [Walker01], we described the initial prototype of an associative processor implemented using field-programmable logic devices (FPLDs). ...
Meiduo Wu, Robert A. Walker, Jerry L. Potter
SIGSOFT
2007
ACM
14 years 5 months ago
Finding bugs efficiently with a SAT solver
We present an approach for checking code against rich specifications, based on existing work that consists of encoding the program in a relational logic and using a constraint sol...
Julian Dolby, Mandana Vaziri, Frank Tip