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» Distributed Cell Biology Simulations with E-Cell System
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LSGRID
2004
Springer
13 years 10 months ago
Distributed Cell Biology Simulations with E-Cell System
Many useful applications of simulation in computational cell biology, e.g. kinetic parameter estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large...
Masahiro Sugimoto, Kouichi Takahashi, Tomoya Kitay...
IPPS
2007
IEEE
13 years 11 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
PDCAT
2004
Springer
13 years 10 months ago
Parallel Computing Platform for the Agent-Based Modeling of Multicellular Biological Systems
Abstract. Agent-based simulation of large multicellular biological systems has become a viable option owing to affordable parallel computers, such as Beowulf-style clusters. We de...
Toh Da-Jun, Francis Tang, Travis Lee, Deepak Sarda...
ICASSP
2011
IEEE
12 years 8 months ago
A stochastic compartmental approach to modeling and simulation of cancer spheroid formation and evolution
In this paper we model and simulate a biological system describing the evolution of cancer stem cells into tumors. Starting from some basic hypotheses about the behavior of these ...
Mónica F. Bugallo, Shishir Dash, Galina Bot...
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
13 years 10 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling