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» Drawing Phylogenetic Trees
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WEA
2010
Springer
330views Algorithms» more  WEA 2010»
14 years 29 days ago
Exact Bipartite Crossing Minimization under Tree Constraints
A tanglegram consists of a pair of (not necessarily binary) trees T1, T2 with leaf sets L1, L2. Additional edges, called tangles, may connect nodes in L1 with those in L2. The task...
Frank Baumann, Christoph Buchheim, Frauke Liers
BMCBI
2010
143views more  BMCBI 2010»
13 years 6 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
BIOINFORMATICS
2010
109views more  BIOINFORMATICS 2010»
13 years 6 months ago
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters
Phylogenetic trees are widely used to display estimates of how groups of species evolved. Each phylogenetic tree can be seen as a collection of clusters, subgroups of the species ...
Leo van Iersel, Steven Kelk, Regula Rupp, Daniel H...
CSB
2005
IEEE
182views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Bacterial Whole Genome Phylogeny Using Proteome Comparison and Optimal Reversal Distance
Traditional phylogenetic tree reconstruction is based on point mutations of a single gene. This approach is hardly suitable for genomes whose genes are almost identical and hardly...
Noppadon Khiripet
ALMOB
2007
129views more  ALMOB 2007»
13 years 6 months ago
Consistency of the Neighbor-Net Algorithm
Background: Neighbor-Net is a novel method for phylogenetic analysis that is currently being widely used in areas such as virology, bacteriology, and plant evolution. Given an inp...
David Bryant, Vincent Moulton, Andreas Spillner