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BMCBI
2010
117views more  BMCBI 2010»
13 years 6 months ago
Automatic, context-specific generation of Gene Ontology slims
Background: The use of ontologies to control vocabulary and structure annotation has added value to genomescale data, and contributed to the capture and re-use of knowledge across...
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark ...
JAIR
2006
90views more  JAIR 2006»
13 years 6 months ago
Engineering Benchmarks for Planning: the Domains Used in the Deterministic Part of IPC-4
In a field of research about general reasoning mechanisms, it is essential to have appropriate benchmarks. Ideally, the benchmarks should reflect possible applications of the deve...
Jörg Hoffmann, Stefan Edelkamp, Sylvie Thi&ea...
BMCBI
2008
121views more  BMCBI 2008»
13 years 6 months ago
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments
Background: High-throughput methods that allow for measuring the expression of thousands of genes or proteins simultaneously have opened new avenues for studying biochemical proce...
Andreas Keller, Christina Backes, Maher Al-Awadhi,...
CLIMA
2004
13 years 7 months ago
Weighted Multi Dimensional Logic Programs
Abstract. We introduce a logical framework suitable to formalize structures of epistemic agents. Such a framework is based on the notion of weighted directed acyclic graphs (WDAGs)...
Pierangelo Dell'Acqua
BMCBI
2007
162views more  BMCBI 2007»
13 years 6 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee