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ITA
2007
118views Communications» more  ITA 2007»
13 years 4 months ago
Uniformly bounded duplication codes
Duplication is the replacement of a factor w within a word by ww. This operation can be used iteratively to generate languages starting from words or sets of words. By undoing dupl...
Peter Leupold, Victor Mitrana
DLT
2007
13 years 6 months ago
Duplication Roots
Recently the duplication closure of words and languages has received much interest. We investigate a reversal of it: the duplication root reduces a word to a square-free one. After...
Peter Leupold
RECOMB
2008
Springer
14 years 4 months ago
Locating Multiple Gene Duplications through Reconciled Trees
We introduce the first exact and efficient algorithm for Guig?o et al.'s problem that, given a collection of rooted, binary gene trees and a rooted, binary species tree, deter...
J. Gordon Burleigh, Mukul S. Bansal, André ...
JCB
2000
137views more  JCB 2000»
13 years 4 months ago
NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees
Large scale gene duplication is a major force driving the evolution of genetic functional innovation. Whole genome duplications are widely believed to have played an important rol...
Kevin Chen, Dannie Durand, Martin Farach-Colton
ISAAC
2009
Springer
147views Algorithms» more  ISAAC 2009»
13 years 11 months ago
Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets
Abstract. We investigate the computational complexity of a new combinatorial problem of inferring a smallest possible multi-labeled phylogenetic tree (MUL tree) which is consistent...
Sylvain Guillemot, Jesper Jansson, Wing-Kin Sung