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» Dynamic programming algorithms for the mosaic longest common...
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CATA
2006
13 years 7 months ago
A Load Balancing Technique for Some Coarse-Grained Multicomputer Algorithms
The paper presents a load balancing method for some CGM (Coarse-Grained Multicomputer) algorithms. This method can be applied on different dynamic programming problems such as: Lo...
Thierry Garcia, David Semé
SPIRE
2010
Springer
13 years 4 months ago
Restricted LCS
The Longest Common Subsequence (LCS) of two or more strings is a fundamental well-studied problem which has a wide range of applications throughout computational sciences. When the...
Zvi Gotthilf, Danny Hermelin, Gad M. Landau, Moshe...
BIOCOMP
2006
13 years 7 months ago
Parameterized Computation of LCS for Two Sequences
- The problem of finding the longest common subsequence is a well-known optimization problem because of its applications, especially in bioinformatics. In this paper, by applying t...
Yuan Lin, Jeff Jenness, Xiuzhen Huang
TCBB
2010
114views more  TCBB 2010»
13 years 4 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
IEEESCC
2009
IEEE
13 years 3 months ago
Theoretical Framework for Eliminating Redundancy in Workflows
In this paper we look at combining and compressing a set of workflows, such that computation can be minimized. In this context, we look at two novel theoretical problems with appl...
Dhrubajyoti Saha, Abhishek Samanta, Smruti R. Sara...