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CORR
2010
Springer
82views Education» more  CORR 2010»
13 years 3 months ago
The zero exemplar distance problem
Given two genomes with duplicate genes, Zero Exemplar Distance is the problem of deciding whether the two genomes can be reduced to the same genome without duplicate genes by delet...
Minghui Jiang
BMCBI
2008
131views more  BMCBI 2008»
13 years 5 months ago
CoCoNUT: an efficient system for the comparison and analysis of genomes
Background: Comparative genomics is the analysis and comparison of genomes from different species. This area of research is driven by the large number of sequenced genomes and hea...
Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohl...
CEC
2007
IEEE
13 years 9 months ago
Efficient assembling of genome fragments using genetic algorithm enhanced by heuristic search
Abstract-- Shotgun sequencing is the state-of-the-art to decode genome sequence. However this technique needs a lot of fragments. Combining those fragments correctly requires enorm...
Satoko Kikuchi, Goutam Chakraborty
BMCBI
2010
126views more  BMCBI 2010»
13 years 5 months ago
Cgaln: fast and space-efficient whole-genome alignment
Background: Whole-genome sequence alignment is an essential process for extracting valuable information about the functions, evolution, and peculiarities of genomes under investig...
Ryuichiro Nakato, Osamu Gotoh
BMCBI
2006
103views more  BMCBI 2006»
13 years 5 months ago
Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice
Background: The identification of chromosomal homology will shed light on such mysteries of genome evolution as DNA duplication, rearrangement and loss. Several approaches have be...
Xiyin Wang, Xiaoli Shi, Zhe Li, Qihui Zhu, Lei Kon...