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BIRD
2007
Springer
128views Bioinformatics» more  BIRD 2007»
13 years 10 months ago
Efficient and Scalable Indexing Techniques for Biological Sequence Data
We investigate indexing techniques for sequence data, crucial in a wide variety of applications, where efficient, scalable, and versatile search algorithms are required. Recent res...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
CIKM
2005
Springer
13 years 10 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
ADBIS
2003
Springer
204views Database» more  ADBIS 2003»
13 years 8 months ago
Hierarchical Bitmap Index: An Efficient and Scalable Indexing Technique for Set-Valued Attributes
Abstract. Set-valued attributes are convenient to model complex objects occurring in the real world. Currently available database systems support the storage of set-valued attribut...
Mikolaj Morzy, Tadeusz Morzy, Alexandros Nanopoulo...
ICDE
2006
IEEE
178views Database» more  ICDE 2006»
14 years 6 months ago
Declarative Querying for Biological Sequences
The ongoing revolution in life sciences research is producing vast amounts of genetic and proteomic sequence data. Scientists want to pose increasingly complex queries on this dat...
Sandeep Tata, Jignesh M. Patel, James S. Friedman,...
BIBE
2010
IEEE
142views Bioinformatics» more  BIBE 2010»
12 years 11 months ago
Compressed q-Gram Indexing for Highly Repetitive Biological Sequences
The study of compressed storage schemes for highly repetitive sequence collections has been recently boosted by the availability of cheaper sequencing technologies and the flood of...
Francisco Claude, Antonio Fariña, Miguel A....