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ISBRA
2007
Springer
13 years 10 months ago
Estimating Bacterial Diversity from Environmental DNA: A Maximum Likelihood Approach
The ability to measure bacterial diversity is a prerequisite for the systematic study of bacterial biogeography and ecology. In this paper we describe a method of estimating divers...
Frederick Cohan, Danny Krizanc, Yun Lu
BMCBI
2005
118views more  BMCBI 2005»
13 years 4 months ago
Vestige: Maximum likelihood phylogenetic footprinting
Background: Phylogenetic footprinting is the identification of functional regions of DNA by their evolutionary conservation. This is achieved by comparing orthologous regions from...
Matthew J. Wakefield, Peter Maxwell, Gavin A. Hutt...
BMCBI
2011
12 years 8 months ago
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Background: With next-generation sequencing technologies, experiments that were considered prohibitive only a few years ago are now possible. However, while these technologies hav...
Osvaldo Zagordi, Arnab Bhattacharya, Nicholas Erik...
JCB
2000
103views more  JCB 2000»
13 years 4 months ago
Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data
Although two-color uorescent DNA microarrays are now standard equipment in many molecular biology laboratories, methods for identifying differentially expressed genes in microarra...
Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, ...
BMCBI
2007
158views more  BMCBI 2007»
13 years 4 months ago
Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
Background: The joint analysis of several categorical variables is a common task in many areas of biology, and is becoming central to systems biology investigations whose goal is ...
Corinne Dahinden, Giovanni Parmigiani, Mark C. Eme...