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» Evaluation of a Catalytic Search Algorithm
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NICSO
2010
Springer
13 years 11 months ago
Evaluation of a Catalytic Search Algorithm
We investigate the search properties of pre-evolutionary random catalytic reaction networks, where reactions might be reversible, and replication is not taken for granted. Since it...
Lidia Yamamoto
BMCBI
2010
139views more  BMCBI 2010»
13 years 5 months ago
CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site anno
Background: The rapid development of structural genomics has resulted in many "unknown function" proteins being deposited in Protein Data Bank (PDB), thus, the functiona...
Gong-Hua Li, Jing-Fei Huang
CORR
2008
Springer
99views Education» more  CORR 2008»
13 years 5 months ago
Partnering Strategies for Fitness Evaluation in a Pyramidal Evolutionary Algorithm
This paper combines the idea of a hierarchical distributed genetic algorithm with different interagent partnering strategies. Cascading clusters of sub-populations are built from ...
Uwe Aickelin, Larry Bull
CORR
2008
Springer
121views Education» more  CORR 2008»
13 years 5 months ago
On the Application of Hierarchical Coevolutionary Genetic Algorithms: Recombination and Evaluation Partners
This paper examines the use of a hierarchical coevolutionary genetic algorithm under different partnering strategies. Cascading clusters of sub-populations are built from the bott...
Uwe Aickelin, Larry Bull
BMCBI
2010
139views more  BMCBI 2010»
13 years 5 months ago
MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains
Background: Many protein interactions, especially those involved in signaling, involve short linear motifs consisting of 5-10 amino acid residues that interact with modular protei...
Hugo Y. K. Lam, Philip M. Kim, Janine Mok, Raffi T...