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» Evolution of discrete gene regulatory models
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CEC
2007
IEEE
13 years 8 months ago
Emergence of feedback in artificial gene regulatory networks
In this paper, we present a model for simulating the evolution of development together with a method for the analysis of emergence of negative feedback inside the regulatory networ...
Till Steiner, Lisa Schramm, Yaochu Jin, Bernhard S...
GECCO
2009
Springer
146views Optimization» more  GECCO 2009»
13 years 8 months ago
Evolving specific network statistical properties using a gene regulatory network model
Abstract. The generation of network topologies with specific, userspecified statistical properties is the aim of this paper. This is achieved through the use of an artifical Gene R...
Miguel Nicolau, Marc Schoenauer
CMSB
2006
Springer
13 years 8 months ago
Rewriting Game Theory as a Foundation for State-Based Models of Gene Regulation
We present a game-theoretic foundation for gene regulatory analysis based on the recent formalism of rewriting game theory. Rewriting game theory is discrete and comes with a graph...
Chafika Chettaoui, Franck Delaplace, Pierre Lescan...
GECCO
2005
Springer
180views Optimization» more  GECCO 2005»
13 years 10 months ago
Inference of gene regulatory networks using s-system and differential evolution
In this work we present an improved evolutionary method for inferring S-system model of genetic networks from the time series data of gene expression. We employed Differential Ev...
Nasimul Noman, Hitoshi Iba
BMCBI
2008
154views more  BMCBI 2008»
13 years 4 months ago
GeNESiS: gene network evolution simulation software
Background: There has been a lot of interest in recent years focusing on the modeling and simulation of Gene Regulatory Networks (GRNs). However, the evolutionary mechanisms that ...
Anton Kratz, Masaru Tomita, Arun Krishnan