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ICANN
2003
Springer
13 years 10 months ago
Optimizing Property Codes in Protein Data Reveals Structural Characteristics
We search for assignments of numbers to the amino acids (property codes) that maximize the autocorrelation function signal in given protein sequence data by an iterative method. Ou...
Olaf Weiss, Andreas Ziehe, Hanspeter Herzel
APBC
2007
110views Bioinformatics» more  APBC 2007»
13 years 6 months ago
Fast Structural Similarity Search Based on Topology String Matching
ibe an abstract data model of protein structures by representing the geometry of proteins using spatial data types and present a framework for fast structural similarity search bas...
Sung-Hee Park, David Gilbert, Keun Ho Ryu
BMCBI
2005
125views more  BMCBI 2005»
13 years 5 months ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
BMCBI
2006
120views more  BMCBI 2006»
13 years 5 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
BMCBI
2006
96views more  BMCBI 2006»
13 years 5 months ago
Structure alignment based on coding of local geometric measures
Background: A structure alignment method based on a local geometric property is presented and its performance is tested in pairwise and multiple structure alignments. In this appr...
Peter L. Chang, Andrew W. Rinne, T. Gregory Dewey