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ICIP
2002
IEEE
14 years 7 months ago
Retrieval of 3D protein structures
A protein molecule is made of a long chain of amino acid sequences that fold into a complex three-dimensional structure. It is often the geometrical shapes that determine the prot...
Shann-Ching Chen, Tsuhan Chen
SISAP
2008
IEEE
166views Data Mining» more  SISAP 2008»
14 years 22 hour ago
Approximate Similarity Search in Genomic Sequence Databases Using Landmark-Guided Embedding
Similarity search in sequence databases is of paramount importance in bioinformatics research. As the size of the genomic databases increases, similarity search of proteins in the...
Ahmet Sacan, Ismail Hakki Toroslu
ISMIR
2005
Springer
154views Music» more  ISMIR 2005»
13 years 11 months ago
Exploiting the Tradeoff Between Precision and Cpu-Time to Speed Up Nearest Neighbor Search
We describe a recursive algorithm to quickly compute the N nearest neighbors according to a similarity measure in a metric space. The algorithm exploits an intrinsic property of a...
Pierre Roy, Jean-Julien Aucouturier, Franço...
ADL
2000
Springer
251views Digital Library» more  ADL 2000»
13 years 10 months ago
Efficient Similarity Search in Digital Libraries
Digital libraries are a core information technology. When the stored data is complex, e.g. high-resolution images or molecular protein structures, simple query types like the exac...
Christian Böhm, Bernhard Braunmüller, Ha...
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
13 years 11 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu