Sciweavers

7 search results - page 1 / 2
» Exploring FPGAs for accelerating the phylogenetic likelihood...
Sort
View
IPPS
2009
IEEE
13 years 12 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
BMCBI
2010
109views more  BMCBI 2010»
13 years 5 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos
ICPP
2009
IEEE
13 years 12 months ago
Fine-grain Parallelism Using Multi-core, Cell/BE, and GPU Systems: Accelerating the Phylogenetic Likelihood Function
We are currently faced with the situation where applications have increasing computational demands and there is a wide selection of parallel processor systems. In this paper we fo...
Frederico Pratas, Pedro Trancoso, Alexandros Stama...
FPGA
2008
ACM
136views FPGA» more  FPGA 2008»
13 years 6 months ago
A complexity-effective architecture for accelerating full-system multiprocessor simulations using FPGAs
Functional full-system simulators are powerful and versatile research tools for accelerating architectural exploration and advanced software development. Their main shortcoming is...
Eric S. Chung, Eriko Nurvitadhi, James C. Hoe, Bab...
IPPS
2007
IEEE
13 years 11 months ago
RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine
Computational phylogeny is a challenging application even for the most powerful supercomputers. It is also an ideal candidate for benchmarking emerging multiprocessor architecture...
Filip Blagojevic, Alexandros Stamatakis, Christos ...