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BIBE
2006
IEEE
160views Bioinformatics» more  BIBE 2006»
13 years 10 months ago
Methods for Random Modularization of Biological Networks
— Biological networks are formalized summaries of our knowledge about interactions among biological system components, like genes, proteins, or metabolites. From their global top...
Zachary M. Saul, Vladimir Filkov
JMLR
2008
230views more  JMLR 2008»
13 years 4 months ago
Exponentiated Gradient Algorithms for Conditional Random Fields and Max-Margin Markov Networks
Log-linear and maximum-margin models are two commonly-used methods in supervised machine learning, and are frequently used in structured prediction problems. Efficient learning of...
Michael Collins, Amir Globerson, Terry Koo, Xavier...
12
Voted
ICML
2009
IEEE
14 years 5 months ago
Learning structurally consistent undirected probabilistic graphical models
In many real-world domains, undirected graphical models such as Markov random fields provide a more natural representation of the dependency structure than directed graphical mode...
Sushmita Roy, Terran Lane, Margaret Werner-Washbur...
TVCG
2008
119views more  TVCG 2008»
13 years 4 months ago
Exploration of Networks using overview+detail with Constraint-based cooperative layout
A standard approach to large network visualization is to provide an overview of the network and a detailed view of a small component of the graph centred around a focal node. The u...
Tim Dwyer, Kim Marriott, Falk Schreiber, Peter J. ...
BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
13 years 4 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj