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» FASH: A web application for nucleotides sequence search
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SIGIR
2005
ACM
13 years 11 months ago
SimFusion: measuring similarity using unified relationship matrix
In this paper we use a Unified Relationship Matrix (URM) to represent a set of heterogeneous data objects (e.g., web pages, queries) and their interrelationships (e.g., hyperlinks...
Wensi Xi, Edward A. Fox, Weiguo Fan, Benyu Zhang, ...
BMCBI
2004
106views more  BMCBI 2004»
13 years 5 months ago
ESTIMA, a tool for EST management in a multi-project environment
Background: Single-pass, partial sequencing of complementary DNA (cDNA) libraries generates thousands of chromatograms that are processed into high quality expressed sequence tags...
Charu G. Kumar, Richard LeDuc, George Gong, Levan ...
HICSS
2007
IEEE
187views Biometrics» more  HICSS 2007»
13 years 11 months ago
A Service-Oriented Data Integration and Analysis Environment for In Silico Experiments and Bioinformatics Research
In this paper, we present a practical experiment of building a service-oriented system upon current web services technologies and bioinformatics middleware. The system allows scie...
Xiaorong Xiang, Gregory R. Madey, Jeanne Romero-Se...
IUI
2010
ACM
14 years 6 days ago
Lowering the barriers to website testing with CoTester
In this paper, we present CoTester, a system designed to decrease the difficulty of testing web applications. CoTester allows testers to create test scripts that are represented ...
Jalal Mahmud, Tessa Lau
FCCM
2011
IEEE
311views VLSI» more  FCCM 2011»
12 years 9 months ago
String Matching in Hardware Using the FM-Index
—String matching is a ubiquitous problem that arises in a wide range of applications in computing, e.g., packet routing, intrusion detection, web querying, and genome analysis. D...
Edward Fernandez, Walid Najjar, Stefano Lonardi