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» Fast Alignments of Metabolic Networks
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AUTOMATICA
2011
12 years 9 months ago
Fast computation of minimal elementary decompositions of metabolic flux vectors
The concept of elementary flux vector is valuable in a number of applications of metabolic engineering. For instance, in metabolic flux analysis, each admissible flux vector ca...
Raphaël M. Jungers, Francisca Zamorano, Vince...
BMCBI
2010
155views more  BMCBI 2010»
13 years 3 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
BMCBI
2005
94views more  BMCBI 2005»
13 years 6 months ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...
BIBE
2007
IEEE
145views Bioinformatics» more  BIBE 2007»
14 years 11 days ago
Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways
Network mapping is a convenient tool for comparing and exploring biological networks; it can be used for predicting unknown pathways, fast and meaningful searching of databases, a...
Qiong Cheng, Robert W. Harrison, Alexander Zelikov...
CDC
2008
IEEE
122views Control Systems» more  CDC 2008»
14 years 15 days ago
Metabolic networks analysis using convex optimization
— Metabolic networks map the biochemical reactions in a living cell to the flow of various chemical substances in the cell, which are called metabolites. A standard model of a m...
A. Agung Julius, Marcin Imielinski, George J. Papp...