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    NIPS
    2007
    121views Information Technology» more  NIPS 2007»
    Feature Selection Methods for Improving Protein Structure Prediction with Rosetta
    13 years 6 months ago
    Feature Selection Methods for Improving Protein Structure Prediction with Rosetta
    Download  books.nips.cc
    Rosetta is one of the leading algorithms for protein structure prediction today. It is a Monte Carlo energy minimization method requiring many random restarts to find structures ...
    Ben Blum, Michael I. Jordan, David Kim, Rhiju Das,...
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    BMCBI
    2008
    128views more  BMCBI 2008»
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    13 years 5 months ago
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    Download  www.biomedcentral.com
    Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...
    Christopher Bystroff, Bobbie-Jo M. Webb-Robertson
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    BMCBI
    2008
    86views more  BMCBI 2008»
    Predicting protein linkages in bacteria: Which method is best depends on task
    13 years 5 months ago
    Predicting protein linkages in bacteria: Which method is best depends on task
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    Background: Applications of computational methods for predicting protein functional linkages are increasing. In recent years, several bacteria-specific methods for predicting link...
    Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill,...
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    RECOMB
    2007
    Springer
    190views Computational Biology» more  RECOMB 2007»
    Minimizing and Learning Energy Functions for Side-Chain Prediction
    14 years 5 months ago
    Minimizing and Learning Energy Functions for Side-Chain Prediction
    Download  www.cs.huji.ac.il
    Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
    Chen Yanover, Ora Schueler-Furman, Yair Weiss
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    BMCBI
    2010
    133views more  BMCBI 2010»
    Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical
    13 years 5 months ago
    Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical
    Download  www.biomedcentral.com
    Background: Many structural properties such as solvent accessibility, dihedral angles and helix-helix contacts can be assigned to each residue in a membrane protein. Independent s...
    Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paud...
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