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BMCBI
2004
167views more  BMCBI 2004»
13 years 4 months ago
Feature selection for splice site prediction: A new method using EDA-based feature ranking
Background: The identification of relevant biological features in large and complex datasets is an important step towards gaining insight in the processes underlying the data. Oth...
Yvan Saeys, Sven Degroeve, Dirk Aeyels, Pierre Rou...
NAR
2007
95views more  NAR 2007»
13 years 4 months ago
SplicePort - An interactive splice-site analysis tool
SplicePort is a web-based tool for splice-site analysis that allows the user to make splice-site predictions for submitted sequences. In addition, the user can also browse the ric...
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur...
BMCBI
2008
102views more  BMCBI 2008»
13 years 4 months ago
Fast splice site detection using information content and feature reduction
Background: Accurate identification of splice sites in DNA sequences plays a key role in the prediction of gene structure in eukaryotes. Already many computational methods have be...
A. K. M. A. Baten, Saman K. Halgamuge, Bill C. H. ...
NAR
2002
82views more  NAR 2002»
13 years 4 months ago
PALS db: Putative Alternative Splicing database
PALS db is a collection of Putative Alternative Splicing information from 19 936 human UniGene clusters and 16 615 mouse UniGene clusters. Alternative splicing (AS) sites were pre...
Y.-H. Huang, Y.-T. Chen, J.-J. Lai, S.-T. Yang, U....
BMCBI
2008
101views more  BMCBI 2008»
13 years 4 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...