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» Finding Motifs in a Database of Shapes
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IMSCCS
2006
IEEE
13 years 11 months ago
Identification of New Members of Hydrophobin Family Using Primary Structure Analysis
Background: Hydrophobins are fungal proteins that can turn into amphipathic membranes at hydrophilic/hydrophobic interfaces by self-assembly. The assemblages by Class I hydrophobi...
Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O...
BMCBI
2007
116views more  BMCBI 2007»
13 years 5 months ago
Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases
Background: The pyridine nucleotide disulfide reductase (PNDR) is a large and heterogeneous protein family divided into two classes (I and II), which reflect the divergent evoluti...
César L. Avila, Viviana A. Rapisarda, Ricar...
JCB
2008
159views more  JCB 2008»
13 years 5 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
DAS
2006
Springer
13 years 9 months ago
Finding the Best-Fit Bounding-Boxes
The bounding-box of a geometric shape in 2D is the rectangle with the smallest area in a given orientation (usually upright) that complete contains the shape. The best-fit bounding...
Bo Yuan, Leong Kwoh, Chew Lim Tan
BMCBI
2008
208views more  BMCBI 2008»
13 years 5 months ago
GraphFind: enhancing graph searching by low support data mining techniques
Background: Biomedical and chemical databases are large and rapidly growing in size. Graphs naturally model such kinds of data. To fully exploit the wealth of information in these...
Alfredo Ferro, Rosalba Giugno, Misael Mongiov&igra...