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» Finding Transport Proteins in a General Protein Database
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NAR
2011
191views Computer Vision» more  NAR 2011»
12 years 8 months ago
The protein common interface database (ProtCID) - a comprehensive database of interactions of homologous proteins in multiple cr
The protein common interface database (ProtCID) is a database that contains clusters of similar homodimeric and heterodimeric interfaces observed in multiple crystal forms (CFs). ...
Qifang Xu, Roland L. Dunbrack Jr.
BMCBI
2008
120views more  BMCBI 2008»
13 years 5 months ago
DBMLoc: a Database of proteins with multiple subcellular localizations
Background: Subcellular localization information is one of the key features to protein function research. Locating to a specific subcellular compartment is essential for a protein...
Song Zhang, Xuefeng Xia, Jincheng Shen, Yun Zhou, ...
BIBE
2007
IEEE
152views Bioinformatics» more  BIBE 2007»
13 years 5 months ago
SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
Tom Milledge, Gaolin Zheng, Tim Mullins, Giri Nara...
BMCBI
2010
113views more  BMCBI 2010»
13 years 5 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu
NAR
2011
196views Computer Vision» more  NAR 2011»
12 years 8 months ago
UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DN
The Universal PBM Resource for OligonucleotideBinding Evaluation (UniPROBE) database is a centralized repository of information on the DNAbinding preferences of proteins as determ...
Kimberly Robasky, Martha L. Bulyk