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» Finding approximate tandem repeats in genomic sequences
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BMCBI
2008
139views more  BMCBI 2008»
13 years 5 months ago
Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repea
Background: Identification of approximate tandem repeats is an important task of broad significance and still remains a challenging problem of computational genomics. Often there ...
Vladimir Paar, Nenad Pavin, Ivan Basar, Marija Ros...
RECOMB
2006
Springer
14 years 5 months ago
Evolution of Tandemly Repeated Sequences Through Duplication and Inversion
Abstract. Given a phylogenetic tree T for a family of tandemly repeated genes and their signed order O on the chromosome, we aim to find the minimum number of inversions compatible...
Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, ...
BMCBI
2010
104views more  BMCBI 2010»
13 years 5 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
RECOMB
1997
Springer
13 years 9 months ago
Sequence alignment with tandem duplication
Algorithm development for comparing and aligning biological sequences has, until recently, been based on the SI model of mutational events which assumes that modi cation of sequen...
Gary Benson
ISMIR
2004
Springer
106views Music» more  ISMIR 2004»
13 years 10 months ago
Finding Approximate Repeating Patterns from Sequence Data
In this paper, an application of feature extraction from music data is first introduced to motivate our research of finding approximate repeating patterns from sequence data. An a...
Jia-Lien Hsu, Arbee L. P. Chen, Hung-Chen Chen