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» Free energy computation by controlled Langevin dynamics
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JCC
2011
87views more  JCC 2011»
13 years 7 days ago
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations
Abstract: With today’s available computer power, free energy calculations from equilibrium molecular dynamics simulations “via counting” become feasible for an increasing num...
Djurre H. De Jong, Lars V. Schäfer, Alex H. D...
RECOMB
2007
Springer
14 years 5 months ago
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation
We present a technique for approximating the free energy of protein structures using Generalized Belief Propagation (GBP). The accuracy and utility of these estimates are then demo...
Hetunandan Kamisetty, Eric P. Xing, Christopher Ja...
SIGMETRICS
2003
ACM
130views Hardware» more  SIGMETRICS 2003»
13 years 10 months ago
Analysis of TCP's computational energy cost for mobile computing
In this paper we present results from a detailed measurement study of TCP (Transmission Control Protocol) running over a wireless link. Our primary goal was on obtaining a breakdo...
Bokyung Wang, Suresh Singh
JUCS
2008
134views more  JUCS 2008»
13 years 5 months ago
Computability of Topological Pressure for Sofic Shifts with Applications in Statistical Physics
: The topological pressure of dynamical systems theory is examined from a computability theoretic point of view. It is shown that for sofic shift dynamical systems, the topological...
Christoph Spandl
CORR
1999
Springer
143views Education» more  CORR 1999»
13 years 5 months ago
Collective Intelligence for Control of Distributed Dynamical Systems
We consider the El Farol bar problem, also known as the minority game W. B. Arthur, The American Economic Review, 842: 406 411 1994, D. Challet and Y.C. Zhang, Physica A, 256:514 ...
David Wolpert, Kevin R. Wheeler, Kagan Tumer