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» Genomic analysis of gene regulation complexity
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BMCBI
2007
176views more  BMCBI 2007»
13 years 5 months ago
Genome Expression Pathway Analysis Tool - Analysis and visualization of microarray gene expression data under genomic, proteomic
Background: Regulation of gene expression is relevant to many areas of biology and medicine, in the study of treatments, diseases, and developmental stages. Microarrays can be use...
Markus Weniger, Julia C. Engelmann, Jörg Schu...
BMCBI
2004
142views more  BMCBI 2004»
13 years 5 months ago
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
Background: Microarray and other high-throughput technologies are producing large sets of interesting genes that are difficult to analyze directly. Bioinformatics tools are needed...
Bing Zhang, Denise Schmoyer, Stefan Kirov, Jay Sno...
IV
2009
IEEE
155views Visualization» more  IV 2009»
13 years 12 months ago
Visualizing Temporal Dynamics at the Genomic and Metabolic Level
We present an application for integrated visualization of gene expression data from time series experiments in gene regulation networks and metabolic networks. Such integration is...
Romain Bourqui, Michel A. Westenberg
BMCBI
2005
86views more  BMCBI 2005»
13 years 5 months ago
Chromosomal clustering of a human transcriptome reveals regulatory background
Background: There has been much evidence recently for a link between transcriptional regulation and chromosomal gene order, but the relationship between genomic organization, regu...
Jan H. Vogel, Anja von Heydebreck, Antje Purmann, ...
RECOMB
2009
Springer
14 years 2 days ago
Reconstructing Histories of Complex Gene Clusters on a Phylogeny
Abstract. Clusters of genes that have evolved by repeated segmental duplication present difficult challenges throughout genomic analysis, from sequence assembly to functional analy...
Tomás Vinar, Brona Brejová, Giltae S...