22 search results - page 2 / 5 » Geometric Suffix Tree: A New Index Structure for Protein 3-D... |
EDBT
2012
ACM
11 years 7 months ago
2012
ACM
Increased availability of large repositories of chemical compounds has created new challenges and opportunities for the application of data-mining and indexing techniques to probl...
WWW
2007
ACM
14 years 5 months ago
2007
ACM
In this paper, we propose a new similarity measure to compute the pairwise similarity of text-based documents based on suffix tree document model. By applying the new suffix tree ...
BMCBI
2005
13 years 5 months ago
2005
Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
RECOMB
1999
Springer
13 years 9 months ago
1999
Springer
We consider the problem of identifying common three-dimensional substructures between proteins. Our method is based on comparing the shape of the α-carbon backbone structures of ...
BMCBI
2007
13 years 5 months ago
2007
Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...