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» Haplotype assembly from aligned weighted SNP fragments
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CANDC
2005
ACM
13 years 4 months ago
Haplotype assembly from aligned weighted SNP fragments
Given an assembled genome of a diploid organism the haplotype assembly problem can be formulated as retrieval of a pair of haplotypes from a set of aligned weighted SNP fragments....
Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Shen...
RECOMB
2003
Springer
14 years 5 months ago
Haplotype reconstruction from SNP alignment
In this paper, we describe a method for statistical reconstruction of haplotypes from a set of aligned SNP fragments. We consider the case of a pair of homologous human chromosome...
Lei Li, Jong Hyun Kim, Michael S. Waterman
INFORMS
2010
107views more  INFORMS 2010»
13 years 3 months ago
A Class Representative Model for Pure Parsimony Haplotyping
Haplotyping estimation from aligned Single Nucleotide Polymorphism (SNP) fragments has attracted more and more attention in the recent years due to its importance in analysis of m...
Daniele Catanzaro, Alessandra Godi, Martine Labb&e...
ESA
2001
Springer
105views Algorithms» more  ESA 2001»
13 years 9 months ago
SNPs Problems, Complexity, and Algorithms
Abstract. Single nucleotide polymorphisms (SNPs) are the most frequent form of human genetic variation. They are of fundamental importance for a variety of applications including m...
Giuseppe Lancia, Vineet Bafna, Sorin Istrail, Ross...