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» Hardness of Optimal Spaced Seed Design
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CPM
2005
Springer
100views Combinatorics» more  CPM 2005»
13 years 6 months ago
Hardness of Optimal Spaced Seed Design
Abstract. Speeding up approximate pattern matching is a line of research in stringology since the 80’s. Practically fast approaches belong to the class of filtration algorithms,...
François Nicolas, Eric Rivals
ICALP
2005
Springer
13 years 10 months ago
Optimal Spaced Seeds for Faster Approximate String Matching
Filtering is a standard technique for fast approximate string matching in practice. In filtering, a quick first step is used to rule out almost all positions of a text as possib...
Martin Farach-Colton, Gad M. Landau, Süleyman...
RECOMB
2004
Springer
14 years 5 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
AISB
1995
Springer
13 years 8 months ago
The Ant Colony Metaphor for Searching Continuous Design Spaces
This paper describes a form of dynamical computational system--4he ant colony---and presents an ant colony model for continuous space optimisation problems. The ant colony metapho...
George Bilchev, Ian C. Parmee
GECCO
2007
Springer
189views Optimization» more  GECCO 2007»
13 years 8 months ago
A genetic algorithm with exon shuffling crossover for hard bin packing problems
A novel evolutionary approach for the bin packing problem (BPP) is presented. A simple steady-state genetic algorithm is developed that produces results comparable to other approa...
Philipp Rohlfshagen, John A. Bullinaria