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» High Performance Database Searching with HMMer on FPGAs
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VLDB
2004
ACM
73views Database» more  VLDB 2004»
13 years 11 months ago
High Performance Index Build Algorithms for Intranet Search Engines
Marcus Fontoura, Eugene J. Shekita, Jason Y. Zien,...
TREC
2007
13 years 7 months ago
Exegy at TREC 2007 Million Query Track
Exegy’s submission for the TREC 2007 million query track consisted of results obtained by running the queries against the raw data, i.e., the data was not indexed. The hardwarea...
Naveen Singla, Ronald S. Indeck
IPPS
2009
IEEE
14 years 22 days ago
Improving MPI-HMMER's scalability with parallel I/O
We present PIO-HMMER, an enhanced version of MPI-HMMER. PIO-HMMER improves on MPIHMMER’s scalability through the use of parallel I/O and a parallel file system. In addition, we...
John Paul Walters, Rohan Darole, Vipin Chaudhary
BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
13 years 6 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...
FCCM
2004
IEEE
133views VLSI» more  FCCM 2004»
13 years 9 months ago
A Methodology for Synthesis of Efficient Intrusion Detection Systems on FPGAs
Intrusion detection for network security is a computation intensive application demanding high system performance. System level design, a relatively unexplored field in this area,...
Zachary K. Baker, Viktor K. Prasanna