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GCB
2010
Springer
182views Biometrics» more  GCB 2010»
13 years 3 months ago
Repeat-aware Comparative Genome Assembly
: The current high-throughput sequencing technologies produce gigabytes of data even when prokaryotic genomes are processed. In a subsequent assembly phase, the generated overlappi...
Peter Husemann, Jens Stoye
BMCBI
2010
144views more  BMCBI 2010»
13 years 5 months ago
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Background: The investigation of plant genome structure and evolution requires comprehensive characterization of repetitive sequences that make up the majority of higher plant nuc...
Petr Novák, Pavel Neumann, Jirí Maca...
BMCBI
2008
104views more  BMCBI 2008»
13 years 5 months ago
ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
Background: Genome survey sequences (GSS) offer a preliminary global view of a genome since, unlike ESTs, they cover coding as well as non-coding DNA and include repetitive region...
Thomas D. Otto, Leonardo H. F. Gomes, Marcelo Alve...
CPM
2007
Springer
102views Combinatorics» more  CPM 2007»
13 years 11 months ago
Non-breaking Similarity of Genomes with Gene Repetitions
Abstract. In this paper we define a new similarity measure, the nonbreaking similarity, which is the complement of the famous breakpoint distance between genomes (in general, betw...
Zhixiang Chen, Bin Fu, Jinhui Xu, Bo-Ting Yang, Zh...
CIBCB
2008
IEEE
13 years 11 months ago
An information theoretic approach for the discovery of irregular and repetitive patterns in genomic data
sequence content at an abstract level and offers novel ways to examine the information contained in them. Our approach is an information theoretic search process which uses patter...
Willard Davis, Ananth Kalyanaraman, Diane J. Cook