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» Identification of NAD interacting residues in proteins
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BMCBI
2010
113views more  BMCBI 2010»
13 years 5 months ago
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information
Background: Flavin binding proteins (FBP) plays a critical role in several biological functions such as electron transport system (ETS). These flavoproteins contain very tightly b...
Nitish K. Mishra, Gajendra P. S. Raghava
BMCBI
2007
89views more  BMCBI 2007»
13 years 5 months ago
Selective prediction of interaction sites in protein structures with THEMATICS
Background: Methods are now available for the prediction of interaction sites in protein 3D structures. While many of these methods report high success rates for site prediction, ...
Ying Wei, Jaeju Ko, Leonel F. Murga, Mary Jo Ondre...
BMCBI
2005
125views more  BMCBI 2005»
13 years 5 months ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
IMSCCS
2007
IEEE
13 years 12 months ago
Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains
Background: DNA-binding proteins are of utmost importance to gene regulation. The identification of DNA-binding domains is useful for understanding the regulation mechanisms of DN...
Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yun...
CSB
2004
IEEE
116views Bioinformatics» more  CSB 2004»
13 years 9 months ago
In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity
One of the most remarkable properties of enzyme-substrate binding is the high substrate specificity among homologous enzymes. Identification of regions in enzymes that play an imp...
Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan...