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» Identifying Structural Motifs in Proteins
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ISMB
1994
13 years 6 months ago
Knowledge Discovery of Multilevel Protein Motifs
A new category of protein motif is introduced. This type of motif captures, in addition to global structure, the nested structure of its componentparts. Adata.set of four proteins...
Darrell Conklin, Suzanne Fortier, Janice I. Glasgo...
BMCBI
2010
148views more  BMCBI 2010»
13 years 5 months ago
Analysis of interactions between ribosomal proteins and RNA structural motifs
Background: One important goal of structural bioinformatics is to recognize and predict the interactions between protein binding sites and RNA. Recently, a comprehensive analysis ...
Giovanni Ciriello, Claudio Gallina, Concettina Gue...
BMCBI
2010
97views more  BMCBI 2010»
13 years 5 months ago
Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and non-transmembr
Background: While occurring enzymatically in biological systems, O-linked glycosylation affects protein folding, localization and trafficking, protein solubility, antigenicity, bi...
Shu-An Chen, Tzong-Yi Lee, Yu-Yen Ou
ALMOB
2006
138views more  ALMOB 2006»
13 years 5 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
BMCBI
2010
129views more  BMCBI 2010»
13 years 5 months ago
The LabelHash Algorithm for Substructure Matching
Background: There is an increasing number of proteins with known structure but unknown function. Determining their function would have a significant impact on understanding diseas...
Mark Moll, Drew H. Bryant, Lydia E. Kavraki