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WABI
2009
Springer
155views Bioinformatics» more  WABI 2009»
14 years 10 days ago
A Markov Classification Model for Metabolic Pathways
Background: This paper considers the problem of identifying pathways through metabolic networks that relate to a specific biological response. Our proposed model, HME3M, first ide...
Timothy Hancock, Hiroshi Mamitsuka
BMCBI
2007
154views more  BMCBI 2007»
13 years 5 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
BMCBI
2008
162views more  BMCBI 2008»
13 years 5 months ago
Improved identification of conserved cassette exons using Bayesian networks
Background: Alternative splicing is a major contributor to the diversity of eukaryotic transcriptomes and proteomes. Currently, large scale detection of alternative splicing using...
Rileen Sinha, Michael Hiller, Rainer Pudimat, Ulri...
BMCBI
2005
92views more  BMCBI 2005»
13 years 5 months ago
FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform
Background: Two of the main objectives of the genomic and post-genomic era are to structurally and functionally annotate genomes which consists of detecting genes' position a...
Philippe Gouret, Vérane Vitiello, Nathalie ...
SDM
2011
SIAM
370views Data Mining» more  SDM 2011»
12 years 8 months ago
Sparse Latent Semantic Analysis
Latent semantic analysis (LSA), as one of the most popular unsupervised dimension reduction tools, has a wide range of applications in text mining and information retrieval. The k...
Xi Chen, Yanjun Qi, Bing Bai, Qihang Lin, Jaime G....