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» Improved Layout of Phylogenetic Networks
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CCCG
2007
13 years 6 months ago
Improved Layouts of the Multigrid Network
In a previous paper, Calamoneri and Massini studied the problem of drawing the multigrid network in “a grid of minimum area”. In this paper we show that we can draw the multig...
Shabnam Aziza, Therese C. Biedl
BMCBI
2007
153views more  BMCBI 2007»
13 years 4 months ago
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
Background: Alternative representations of biochemical networks emphasise different aspects of the data and contribute to the understanding of complex biological systems. In this ...
Brian J. Holden, John W. Pinney, Simon C. Lovell, ...
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
13 years 11 months ago
Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models
Abstract. Computational inference of transcriptional regulatory networks remains a challenging problem, in part due to the lack of strong network models. In this paper we present e...
Xiuwei Zhang, Bernard M. E. Moret
BMCBI
2006
116views more  BMCBI 2006»
13 years 4 months ago
Gene annotation and network inference by phylogenetic profiling
Background: Phylogenetic analysis is emerging as one of the most informative computational methods for the annotation of genes and identification of evolutionary modules of functi...
Jie Wu, Zhenjun Hu, Charles DeLisi
APVIS
2006
13 years 6 months ago
Increasing the readability of graph drawings with centrality-based scaling
A common problem in visualising some networks is the presence of localised high density areas in an otherwise sparse graph. Applying common graph drawing algorithms on such networ...
Damian Merrick, Joachim Gudmundsson