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BMCBI
2004
158views more  BMCBI 2004»
13 years 5 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
BIBE
2006
IEEE
119views Bioinformatics» more  BIBE 2006»
13 years 11 months ago
Large Grain Size Stochastic Optimization Alignment
DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...
EMNLP
2007
13 years 6 months ago
Improving Word Alignment with Bridge Languages
We describe an approach to improve Statistical Machine Translation (SMT) performance using multi-lingual, parallel, sentence-aligned corpora in several bridge languages. Our appro...
Shankar Kumar, Franz Josef Och, Wolfgang Macherey
BMCBI
2004
156views more  BMCBI 2004»
13 years 5 months ago
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...
CIKM
2009
Springer
13 years 12 months ago
Linear predictive coding representation of correlated mutation for protein sequence alignment
Background: Although both conservation and correlated mutation (CM) are important information reflecting the different sorts of context in multiple sequence alignment, most of ali...
Chan-seok Jeong, Dongsup Kim