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» Including Biological Literature Improves Homology Search
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PSB
2001
13 years 6 months ago
Including Biological Literature Improves Homology Search
Jeffrey T. Chang, Soumya Raychaudhuri, Russ B. Alt...
BMCBI
2006
153views more  BMCBI 2006»
13 years 4 months ago
Automatic document classification of biological literature
Background: Document classification is a wide-spread problem with many applications, from organizing search engine snippets to spam filtering. We previously described Textpresso, ...
David Chen, Hans-Michael Müller, Paul W. Ster...
BMCBI
2007
102views more  BMCBI 2007»
13 years 4 months ago
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties
Background: Homology is a key concept in both evolutionary biology and genomics. Detection of homology is crucial in fields like the functional annotation of protein sequences and...
Jos Boekhorst, Berend Snel
BIOCOMP
2009
13 years 5 months ago
Improving Remote Homology Detection Using Sequence Properties and Position Specific Scoring Matrices
Current biological sequence comparison tools frequently fail to recognize matches between homologs when sequence similarity is below the twilight zone of less than 25% sequence id...
Gina Cooper, Michael L. Raymer
GCB
2009
Springer
105views Biometrics» more  GCB 2009»
13 years 11 months ago
Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search
: Genome annotation relies to a large extent on the recognition of homologs to already known genes. The starting point for such protocols is a collection of known sequences from on...
Peter Menzel, Jan Gorodkin, Peter F. Stadler