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BIOCOMP
2008
13 years 6 months ago
Incomparability of Results Between Phylogenetic Search Programs
Kenneth Sundberg, Hyrum Carroll, Quinn Snell, Mark...
CONSTRAINTS
2008
90views more  CONSTRAINTS 2008»
13 years 4 months ago
Combining Tree Partitioning, Precedence, and Incomparability Constraints
The tree constraint partitions a directed graph into node-disjoint trees. In many practical applications that involve such a partition, there exist side constraints specifying requ...
Nicolas Beldiceanu, Pierre Flener, Xavier Lorca
BMCBI
2008
111views more  BMCBI 2008»
13 years 4 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...
SODA
2004
ACM
124views Algorithms» more  SODA 2004»
13 years 6 months ago
On contract-and-refine transformations between phylogenetic trees
The inference of evolutionary trees using approaches which attempt to solve the maximum parsimony (MP) and maximum likelihood (ML) optimization problems is a standard part of much...
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy ...
BMCBI
2010
118views more  BMCBI 2010»
13 years 4 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...