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CMSB
2006
Springer
13 years 8 months ago
Incorporating Time Delays into the Logical Analysis of Gene Regulatory Networks
Based on the logical description of gene regulatory networks developed by R. Thomas, we introduce an enhanced modelling approach that uses timed automata. It yields a refined quali...
Heike Siebert, Alexander Bockmayr
TCS
2008
13 years 4 months ago
Temporal constraints in the logical analysis of regulatory networks
Starting from the logical description of gene regulatory networks developed by R. Thomas, we introduce an enhanced modelling approach based on timed automata. We obtain a refined ...
Heike Siebert, Alexander Bockmayr
CMSB
2007
Springer
13 years 10 months ago
Context Sensitivity in Logical Modeling with Time Delays
For modeling and analyzing regulatory networks based on qualitative information and possibly additional temporal constraints, approaches using hybrid automata can be very helpful. ...
Heike Siebert, Alexander Bockmayr
TSMC
2010
12 years 11 months ago
On Robust Stability of Stochastic Genetic Regulatory Networks With Time Delays: A Delay Fractioning Approach
Robust stability serves as an important regulation mechanism in system biology and synthetic biology. In this paper, the robust stability analysis problem is investigated for a cla...
Yao Wang, Zidong Wang, Jinling Liang
FORMATS
2007
Springer
13 years 10 months ago
On Timed Models of Gene Networks
Abstract. We present a systematic translation from timed models of genetic regulatory networks into products of timed automata to which one can apply verification tools in order l...
Grégory Batt, Ramzi Ben Salah, Oded Maler