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» Indexing and Retrieval for Genomic Databases
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BIOCOMP
2006
13 years 6 months ago
Fast Dictionary Lookup in Genomic Information Retrieval
Indexing and retrieval techniques for homology searching of genomic databases are increasingly important as the search tools are facing great challenges of rapid growth in sequence...
Simon M. C. Yuen, Fu-Lai Chung, Robert Wing Pong L...
TKDE
2002
103views more  TKDE 2002»
13 years 4 months ago
Indexing and Retrieval for Genomic Databases
Hugh E. Williams, Justin Zobel
SISAP
2008
IEEE
166views Data Mining» more  SISAP 2008»
13 years 11 months ago
Approximate Similarity Search in Genomic Sequence Databases Using Landmark-Guided Embedding
Similarity search in sequence databases is of paramount importance in bioinformatics research. As the size of the genomic databases increases, similarity search of proteins in the...
Ahmet Sacan, Ismail Hakki Toroslu
ICDE
2007
IEEE
190views Database» more  ICDE 2007»
13 years 8 months ago
CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences
Suffix tree is an important data structure for indexing a long sequence (like a genome sequence) or a concatenation of sequences. It finds many applications in practice, especiall...
Swee-Seong Wong, Wing-Kin Sung, Limsoon Wong
TREC
2007
13 years 5 months ago
York University at TREC 2007: Genomics Track
Our Genomics experiments in this year mainly focus on improving the passage retrieval performance in the biomedical domain. We address this problem by constructing different inde...
Xiangji Huang, Damon Sotoudeh-Hosseinii, Hashmat R...