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CANDC
2005
ACM
13 years 4 months ago
Integer linear programming as a tool for constructing trees from quartet data
The task of the quartet puzzling problem is to find a best-fitting binary X-tree for a finite n-set from confidence values for the 3 n 4 binary trees with exactly four leaves from...
Jan Weyer-Menkhoff, Claudine Devauchelle, Alexande...
TCBB
2008
122views more  TCBB 2008»
13 years 4 months ago
Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference
Reconstruction of phylogenetic trees is a fundamental problem in computational biology. While excellent heuristic methods are available for many variants of this problem, new adva...
Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ra...
GECCO
2004
Springer
134views Optimization» more  GECCO 2004»
13 years 10 months ago
Combining a Memetic Algorithm with Integer Programming to Solve the Prize-Collecting Steiner Tree Problem
The prize-collecting Steiner tree problem on a graph with edge costs and vertex profits asks for a subtree minimizing the sum of the total cost of all edges in the subtree plus th...
Gunnar W. Klau, Ivana Ljubic, Andreas Moser, Petra...
WABI
2009
Springer
127views Bioinformatics» more  WABI 2009»
13 years 11 months ago
Constructing Majority-Rule Supertrees
Background: Supertree methods combine the phylogenetic information from multiple partially-overlapping trees into a larger phylogenetic tree called a supertree. Several supertree ...
Jianrong Dong, David Fernández-Baca, Fred R...
PKC
2011
Springer
219views Cryptology» more  PKC 2011»
12 years 7 months ago
Linearly Homomorphic Signatures over Binary Fields and New Tools for Lattice-Based Signatures
ded abstract of this work appears in Public Key Cryptography — PKC 2011, ed. R. Gennaro, Springer LNCS 6571 (2011), 1–16. This is the full version. We propose a linearly homom...
Dan Boneh, David Mandell Freeman