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» Interval Methods for Kinetic Simulations
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RECOMB
2006
Springer
14 years 5 months ago
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation
Abstract. This paper presents a new method for studying protein folding kinetics. It uses the recently introduced Stochastic Roadmap Simulation (SRS) method to estimate the transit...
Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L...
BMCBI
2007
102views more  BMCBI 2007»
13 years 5 months ago
qPIPSA: Relating enzymatic kinetic parameters and interaction fields
Background: The simulation of metabolic networks in quantitative systems biology requires the assignment of enzymatic kinetic parameters. Experimentally determined values are ofte...
Razif R. Gabdoulline, Matthias Stein, Rebecca C. W...
CPHYSICS
2004
79views more  CPHYSICS 2004»
13 years 5 months ago
Hybrid kinetic-MHD simulations in general geometry
We present a hybrid kinetic-MHD model consisting of 3 species, the bulk fluid ions and electrons, and a kinetic minority hot particle species. The 3 species equations are derived ...
Charlson C. Kim, Carl R. Sovinec, Scott E. Parker
ESA
2008
Springer
99views Algorithms» more  ESA 2008»
13 years 7 months ago
Robust Kinetic Convex Hulls in 3D
Abstract. Kinetic data structures provide a framework for computing combinatorial properties of continuously moving objects. Although kinetic data structures for many problems have...
Umut A. Acar, Guy E. Blelloch, Kanat Tangwongsan, ...
BMCBI
2006
117views more  BMCBI 2006»
13 years 5 months ago
A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kineti
Background: Dynamic modeling of metabolic reaction networks under in vivo conditions is a crucial step in order to obtain a better understanding of the (dis)functioning of living ...
I. Emrah Nikerel, Wouter A. van Winden, Walter M. ...