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» Invariant features for searching in protein fold databases
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JCB
2006
215views more  JCB 2006»
13 years 6 months ago
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e., segmentation con...
Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, V...
ICPR
2000
IEEE
13 years 10 months ago
Fractal Transforms and Feature Invariance
In this paper, fractal transforms are employed with the aim of image recognition. It is known that such transforms are highly sensitive to distortions like a small shift of an ima...
Ben A. M. Schouten, Paul M. de Zeeuw
NAR
2000
120views more  NAR 2000»
13 years 5 months ago
SCOP: a Structural Classification of Proteins database
The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classificati...
Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, ...
ISMB
2003
13 years 7 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
BMCBI
2010
163views more  BMCBI 2010»
13 years 6 months ago
Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity
Background: Computational comparison of two protein structures is the starting point of many methods that build on existing knowledge, such as structure modeling (including modeli...
Zong Hong Zhang, Hwee Kuan Lee, Ivana Mihalek