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» Kernel-based Template Alignment
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JMLR
2012
11 years 7 months ago
Algorithms for Learning Kernels Based on Centered Alignment
This paper presents new and effective algorithms for learning kernels. In particular, as shown by our empirical results, these algorithms consistently outperform the so-called uni...
Corinna Cortes, Mehryar Mohri, Afshin Rostamizadeh
CIBB
2008
13 years 6 months ago
Analysis of Kernel Based Protein Classification Strategies Using Pairwise Sequence Alignment Measures
Abstract. We evaluated methods of protein classification that use kernels built from BLAST output parameters. Protein sequences were represented as vectors of parameters (e.g. simi...
Dino Franklin, Somdutta Dhir, Sándor Pongor
DAS
2008
Springer
13 years 6 months ago
Digital Ink to Form Alignment for Electronic Clipboard Devices
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Varadarajan Jagannadan, Sriganesh Madhvanath
BMCBI
2011
12 years 8 months ago
GPCR-SSFE: A comprehensive database of G-protein-coupled receptor template predictions and homology models
Background: G protein-coupled receptors (GPCRs) transduce a wide variety of extracellular signals to within the cell and therefore have a key role in regulating cell activity and ...
Catherine L. Worth, Annika Kreuchwig, Gunnar Klein...
BMCBI
2006
148views more  BMCBI 2006»
13 years 4 months ago
Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores
Background: Modelling the interaction between potentially antigenic peptides and Major Histocompatibility Complex (MHC) molecules is a key step in identifying potential T-cell epi...
Jesper Salomon, Darren R. Flower