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    » Large scale hierarchical clustering of protein sequences
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    BMCBI
    2004
    125views more  BMCBI 2004»
    A functional hierarchical organization of the protein sequence space
    13 years 5 months ago
    A functional hierarchical organization of the protein sequence space
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    Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...
    Noam Kaplan, Moriah Friedlich, Menachem Fromer, Mi...
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    JCB
    2007
    198views more  JCB 2007»
    Bayesian Hierarchical Model for Large-Scale Covariance Matrix Estimation
    13 years 5 months ago
    Bayesian Hierarchical Model for Large-Scale Covariance Matrix Estimation
    Download  www.eecs.umich.edu
    Many bioinformatics problems can implicitly depend on estimating large-scale covariance matrix. The traditional approaches tend to give rise to high variance and low accuracy esti...
    Dongxiao Zhu, Alfred O. Hero III
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    NAR
    2000
    111views more  NAR 2000»
    ProtoMap: automatic classification of protein sequences and hierarchy of protein families
    13 years 5 months ago
    ProtoMap: automatic classification of protein sequences and hierarchy of protein families
    Download  cmbi.bjmu.edu.cn
    The ProtoMap site offers an exhaustive classification of all proteins in the SWISS-PROT database, into groups of related proteins. The classification is based on analysis of all p...
    Golan Yona, Nathan Linial, Michal Linial
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    BIBE
    2005
    IEEE
    154views Bioinformatics» more  BIBE 2005»
    Effective Pre-Processing Strategies for Functional Clustering of a Protein-Protein Interactions Network
    13 years 11 months ago
    Effective Pre-Processing Strategies for Functional Clustering of a Protein-Protein Interactions Network
    Download  www.cse.ohio-state.edu
    In this article we present novel preprocessing techniques, based on topological measures of the network, to identify clusters of proteins from Protein-protein interaction (PPI) ne...
    Duygu Ucar, Srinivasan Parthasarathy, Sitaram Asur...
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    BMCBI
    2005
    198views more  BMCBI 2005»
    Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
    13 years 5 months ago
    Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
    Download  www.biomedcentral.com
    Background: The sequencing of the human genome has enabled us to access a comprehensive list of genes (both experimental and predicted) for further analysis. While a majority of t...
    Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D....
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