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BMCBI
2005
143views more  BMCBI 2005»
13 years 4 months ago
Evaluation of BioCreAtIvE assessment of task 2
Background: Molecular Biology accumulated substantial amounts of data concerning functions of genes and proteins. Information relating to functional descriptions is generally extr...
Christian Blaschke, Eduardo Andrés Le&oacut...
BMCBI
2008
100views more  BMCBI 2008»
13 years 4 months ago
Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations
Background: The construction of literature-based networks of gene-gene interactions is one of the most important applications of text mining in bioinformatics. Extracting potentia...
Hyunsoo Kim, Haesun Park, Barry L. Drake
CSB
2005
IEEE
180views Bioinformatics» more  CSB 2005»
13 years 10 months ago
Functional Modularity in a Large-Scale Mammalian Molecular Interaction Network
The Ingenuity™ Pathways Knowledge Base (IPKB) contains over one million findings manually curated from the scientific literature. Highly-structured content from the IPKB forms...
Andreas Kramer, Daniel R. Richards, James O. Bowlb...
BMCBI
2010
144views more  BMCBI 2010»
13 years 4 months ago
Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model
Background: Large-scale genomic studies often identify large gene lists, for example, the genes sharing the same expression patterns. The interpretation of these gene lists is gen...
Xin He, Moushumi Sen Sarma, Xu Ling, Brant W. Chee...
EACL
2006
ACL Anthology
13 years 6 months ago
Exploiting Shallow Linguistic Information for Relation Extraction from Biomedical Literature
We propose an approach for extracting relations between entities from biomedical literature based solely on shallow linguistic information. We use a combination of kernel function...
Claudio Giuliano, Alberto Lavelli, Lorenza Romano