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SP
2008
IEEE
122views Security Privacy» more  SP 2008»
13 years 4 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
BMCBI
2008
220views more  BMCBI 2008»
13 years 4 months ago
Gene prediction in metagenomic fragments: A large scale machine learning approach
Background: Metagenomics is an approach to the characterization of microbial genomes via the direct isolation of genomic sequences from the environment without prior cultivation. ...
Katharina J. Hoff, Maike Tech, Thomas Lingner, Rol...
IPPS
2002
IEEE
13 years 9 months ago
Communication Characteristics of Large-Scale Scientific Applications for Contemporary Cluster Architectures
This paper examines the explicit communication characteristics of several sophisticated scientific applications, which, by themselves, constitute a representative suite of publicl...
Jeffrey S. Vetter, Frank Mueller
WABI
2009
Springer
181views Bioinformatics» more  WABI 2009»
13 years 11 months ago
Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes
Abstract. The existing synteny block reconstruction algorithms use anchors (e.g., orthologous genes) shared over all genomes to construct the synteny blocks for multiple genomes. T...
Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A...
CORR
2002
Springer
156views Education» more  CORR 2002»
13 years 4 months ago
Mapping the Gnutella Network: Properties of Large-Scale Peer-to-Peer Systems and Implications for System Design
Despite recent excitement generated by the peer-to-peer (P2P) paradigm and the surprisingly rapid deployment of some P2P applications, there are few quantitative evaluations of P2...
Matei Ripeanu, Ian T. Foster, Adriana Iamnitchi